FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5449838
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA533659397.92204832510618No Hit
CAGGAAGC421620.7736376751015351No Hit
CAGGAATA130210.2389245331696098No Hit
CAGGAAAA86930.15950932853416927No Hit
AAGGAAGA67130.1231779733636119No Hit
CACGAAGA63490.11649887574639833No Hit
CAGGAACA62230.11418688041736286No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)