FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4157411
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA395298295.08278108659451No Hit
CCCCCCCA909762.1882849686980674No Hit
CCCACCAA343150.8253934960964888No Hit
CCCACACA151650.3647702861227817No Hit
CCCAACCA106370.2558563490595469No Hit
CCCACCCC104310.2509013422055217No Hit
CCAACCCA95120.22879623881304975No Hit
ACCACCCA81260.19545818298936524No Hit
CACACCCA67030.1612301502064626No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)