FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences694461
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA68147198.1294845930873No Hit
TCCTGCGA29470.42435788330806196No Hit
TCATGCAA18750.26999356335344965No Hit
TCAAGCGA8830.12714896876858456No Hit
TCATGCGC8070.11620522966732474No Hit
ACATGCGA7600.10943739101259826No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)