FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3552290
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA343657896.7426082893007No Hit
CCCCCCCA396931.1173918796044242No Hit
CCCACCAA275650.7759783125814614No Hit
CCCACACA91030.25625723125082694No Hit
CCCAACCA65880.18545783142705127No Hit
CCCACCCC54960.1547170979846803No Hit
CCAACCCA48960.1378265851042567No Hit
ACCACCCA45470.12800193677881028No Hit
CACACCCA40040.11271602262202692No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)