FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5449838
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG168780.30969727907508443No Hit
ACTGTCCACAGGTCCC101680.1865743532193067No Hit
CTGGTGGACGCGGTTC98480.18070261905032775No Hit
GTGGTTAACGGCCTGT82960.15222470833077972No Hit
AAGACAAACAGTACGG69840.12815059823796596No Hit
GTGTACTGACAGTCCG67490.12383854345762203No Hit
AGCTATCGACGGTTTA57050.10468201073132817No Hit
GGGTGAATGGACAAAT55860.1024984595872391No Hit
TGTCCCATGGCCAGCT54730.1004250034588184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)