FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3011317
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA83410.27698844060588773No Hit
GGGGGGGGGGGGGGGG73060.24261809699875503No Hit
GGACACCTGGCTCCTT64460.21405916414645154No Hit
GTTAAGAGAGTACGTT55030.1827439621932862No Hit
CGCTTACTGATCACAC53200.17666688694680766No Hit
ATCTTACTGGTTTGGT51040.1694939456722756No Hit
TACCAGTGATACGATC50180.16663805238704527No Hit
TTGTGGTGAAAGACAT49530.1644795283923944No Hit
ATTCCTAACTGCGTGC46610.1547827744471937No Hit
ATAGATGGAGAGTAAT46480.15435106964826353No Hit
ATATGCCGAGAACAGC45070.149668732982944No Hit
TGGAACACTTGAGGCA41890.13910856943988295No Hit
CTTTCTGCTCTTGTGA40990.13611984390882792No Hit
CTTGACGCTCAGGGTA40500.13449264889747575No Hit
AGCTCTGCTGGCCTGT38200.12685479476255737No Hit
ACTGGAACTCTGGAAG37300.12386606923150235No Hit
GCGGTTCGAAGCAAGC35500.11788861816939232No Hit
TGTGACTGACCGTTAA35350.11739049724754982No Hit
TGTACCCTGCTGAGAG34080.11317307344261664No Hit
ACGCTCTTGCCTCAAA33770.11214362353747546No Hit
AGGTAGCGATTGACCA33160.11011793178864929No Hit
TTCCAAACTCCGCTAG32970.10948697862098213No Hit
ACCCTTTCTAGGTGAC32960.10945377055952596No Hit
AGTTCACGACCAGAGA32050.10643183696701476No Hit
ACATGTGTGTCAATGC31560.1048046419556626No Hit
ACACTCCACCGTACAT31460.10447256134110093No Hit
TCCCAGACTCCTAACA31290.10390802429634609No Hit
CACAGCTCTCTCTGGG31210.10364235980469674No Hit
TCAGTCCACCCAGCAC31070.1031774469443104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)