FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences694461
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA36690.5283234047700303No Hit
CGACCAGACGCGCTGT34270.493476235526545No Hit
TAGCTTTACCCTATCC31760.45733309717896325No Hit
CCAGGACTGTAACTCG25810.3716551397414686No Hit
GATGAATGACTCCTAC25540.3677672324291789No Hit
ATCTGTACTGGGACTA22860.32917615244052584No Hit
GTTCTCGACCGTAGAG22720.32716020050082006No Hit
CTTCCTTTGGCTCAGC22380.3222643172186775No Hit
CGATCAAACCCGGCTA21060.30325677035859466No Hit
GGGGGGGGGGGGGGGG20530.29562495230113717No Hit
AGACCATTGAATCCAC20380.2934650037943095No Hit
TGCTGCTACTTTCTTG18230.262505741863114No Hit
GGCAACAGAATAGCAA18230.262505741863114No Hit
ACAGCCGACTTGCGTA16690.24033027052635064No Hit
AACTTACCTCACCTAA14900.21455488501154132No Hit
CGCGTTGGAGCGGTTC14700.21167495366910452No Hit
ATCGAAAGATTTCCGC14470.2083630326253022No Hit
CCCTGAACTAGCTTTG13270.19108344457068144No Hit
CAATTCGGATAACGGG13050.18791552009400095No Hit
GTAACTGTGTGAAAGT13000.18719553725839175No Hit
AGTGGAGTGAGTTGAA12890.18561157502005152No Hit
GGGTAGAACCAGTCTA11900.17135591487498938No Hit
TTCCTAAACTAATGCC11570.16660402815996866No Hit
AAGAACCCTTAACCCA11330.16314811054904452No Hit
CGCGATCGATATCTGG11220.1615641483107043No Hit
TGCAGATACTGCCACG10780.15522829935734334No Hit
CTTTAACTGTCCGTAA10750.1547963096559778No Hit
TCCGGGAACGTTCTCC10750.1547963096559778No Hit
TGATAGAGAGACTGTT10580.15234836801490653No Hit
TGGAACACTCCTAGTA10520.15148438861217547No Hit
GTGAAGCGATCCCAGG10420.15004442294095707No Hit
TTTAGTCTGAGCAATA10400.14975642980671341No Hit
GAGTGTTACACCTGCG10300.148316464135495No Hit
CACATCCTGAGCCTAT10230.14730848816564213No Hit
TACGTTTACTGCACCG10230.14730848816564213No Hit
TGCAGTATGACACCGC10040.14457255339032718No Hit
GCAACTTGAAGGTGCA9900.14255660145062143No Hit
AGTCCTGCTCGAACGA9730.14010865980955015No Hit
AGGTGTGGATCATGTG9730.14010865980955015No Hit
TCTCAGAGATGCATGT9620.1385246975712099No Hit
CTATTGGGACTTGTGA9380.13506877996028574No Hit
CTTAGATCTTGTCACA9370.1349247833931639No Hit
TTCTTAGACGTCCCGA9100.13103687608087422No Hit
CATAGGTACAAGGTGC9090.1308928795137524No Hit
GGTCTAAACTCCTACC9010.12974090697677768No Hit
ATGTACGTGTACTTTC8960.12902092414116847No Hit
ATTTCTGACGGGTAGT8820.12700497220146273No Hit
TGGCAATTGAGTGGTG8770.1262849893658535No Hit
AGAGTACCTTAATCGC8760.12614099279873167No Hit
CGAGTCTCTGCTACGC8570.12340505802341671No Hit
GGGTGTGCTCGCAAAG8500.12239708205356384No Hit
TGAACTGTGAACGTAA8500.12239708205356384No Hit
TCAAAGCACTCTGCAA8460.12182109578507648No Hit
GGTCGCATGGTACTAC8410.1211011129494673No Hit
TGAGGGATGTACGTTG8350.12023713354673625No Hit
GCATGATACTTGCGTA8330.11994914041249256No Hit
TCCATTTGAAATCTGC8290.1193731541440052No Hit
CACCAGGTGCGCCACA8280.11922915757688338No Hit
TCTATGGGATGCTCAA8240.11865317130839602No Hit
GTAATCTCTACACAAA8090.1164932228015684No Hit
CTACAACGAATCTGTG8040.11577323996595922No Hit
GGGATGTGACTGGAAG7950.11447727086186266No Hit
CTAGCTCACGAATAGT7940.11433327429474081No Hit
ACCAAGTTGAAGCTAA7940.11433327429474081No Hit
AGACTACTGGCCCTAG7910.1139012845933753No Hit
TACTGTTTGCTTAAGC7800.11231732235503507No Hit
CTTTCGTCTCGAACGA7800.11231732235503507No Hit
CATTCTATGCCTAGCG7720.11116534981806034No Hit
CACATTACTGATGGAC7680.11058936354957298No Hit
GGCTGACTGAAACTGA7630.1098693807139638No Hit
TAGTACCGAACGAGCA7610.1095813875797201No Hit
AGCCAATTGTTATGGC7470.10756543564001435No Hit
AGGCGATGACCTGCGA7460.1074214390728925No Hit
ATGTCCAGACCGCTAG7450.10727744250577066No Hit
CGAGTCTCTTGGAACG7420.10684545280440513No Hit
GGGCCTTGACTATCTT7410.1067014562372833No Hit
CTAACAGTGCATGATC7380.10626946653591778No Hit
GTCTAATCTAAGTTCC7360.10598147340167412No Hit
TCGGACCGATAGGCGA7340.10569348026743042No Hit
GTGTGATACCGTGCAC7320.10540548713318673No Hit
TTGCGGTCTTTTGGGT7270.10468550429757754No Hit
TGTAAGCACGCGCTGT7260.10454150773045572No Hit
ATAGCCAACCGTTCTC7250.10439751116333386No Hit
TCCGGGTGAACACCTA7240.10425351459621203No Hit
ACGAGGATGAACTAGA7180.10338953519348099No Hit
AAAGCCTTGAACCAAA7170.10324553862635914No Hit
TTTAGGGACCACAGTT7170.10324553862635914No Hit
TGCTAGTGAAGGCGTA7160.10310154205923731No Hit
GCCATTCACCGGAAGT7150.10295754549211546No Hit
AGCTTGTGATTGCGTA7040.10137358325377523No Hit
TGCGCAGACATCAGGG6960.10022161071680051No Hit
GCACTGTCTCGATGGA6950.10007761414967868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)