FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11417217
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTCAGG1117294097.86045058090777No Hit
CGCTCCGG306140.26813889934823876No Hit
CGCTCAGA264110.2313260753474336No Hit
CGCGCAGG238210.2086410374787481No Hit
CGCACAGG191010.1672999646060857No Hit
CGCTCTGG150120.13148563261957796No Hit
CGGTCAGG119680.10482414409746263No Hit
CGCTGAGG117950.10330888867225699No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)