FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3185770
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA313504498.40773188271595No Hit
AACCGGCA78600.24672214252755223No Hit
ATACGGCA76030.23865501903778366No Hit
ATCCGCCA55130.17305078521048287No Hit
ATCCGGAA55010.17267411018372325No Hit
ATCCCGCA36440.1143836497926718No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)