FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004949697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18467809
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1794121897.14860057302953No Hit
CAACCATA1122630.6078847794018228No Hit
CAACCAAC750960.4066318857856933No Hit
CACCCATC630450.34137779960795567No Hit
CAACCCTC516190.27950798061643367No Hit
AAACCATC408490.2211902884635638No Hit
CCACCATC312560.16924584827577543No Hit
CAACAATC311040.16842279449608774RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)