FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16341998
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1612739098.68677012443644No Hit
TTAAGCCA518160.31707261254101243No Hit
TAAAGCCT246080.15058134262407816No Hit
ATAAGCCT236740.14486600720425985No Hit
TTAAGCAT187180.1145392381029541No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)