FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3870973
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA379699798.0889559291682No Hit
AACCGGCA119350.30832041453143694No Hit
ATCCGCCA91160.23549634678412895No Hit
ATACGGCA86160.22257969766257732No Hit
ATCCGGAA76340.19721139878784996No Hit
ATCCCGCA47100.12167483472501617No Hit
ATCAGGCA38800.10023319718324049No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)