FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3844825
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC370665396.4062863719415No Hit
GGTCGCGC524301.3636511414693777No Hit
GGTCGAGA99760.25946564538047895No Hit
GGTCGACC88960.23137594038740386No Hit
GGTCCAGC77340.20115349853374342No Hit
GGACGAGC74810.19457322504925453No Hit
GGTAGAGC72060.18742075387046225No Hit
CGTCGAGC60550.1574844108639535No Hit
GCTCGAGC53520.13920009363234997No Hit
GGTCGAGG44660.11615613194358651No Hit
GGGCGAGC40820.10616868127938203No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)