FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2489848
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT73690.2959618418473738No Hit
GGGGGGGGGGGGGGGG72220.2900578669862578No Hit
TCGCGGTGAGTCTTGA62780.25214390597337666No Hit
GTTAAGAGAGTACGTT51430.20655879395047408No Hit
CGCTTACTGATCACAC45680.18346501473182297No Hit
TACCAGTGATACGATC42580.17101445550089805No Hit
TTGTGGTGAAAGACAT41790.16784157105172684No Hit
ATCTTACTGGTTTGGT40110.16109417121045141No Hit
ATTCCTAACTGCGTGC39850.16004993075882543No Hit
ATAGATGGAGAGTAAT39570.15892536411861286No Hit
ATATGCCGAGAACAGC38480.1545475868406425No Hit
TGGAACACTTGAGGCA37040.14876410126240638No Hit
GCTATACGACAGGTGA34270.13763892414316053No Hit
CTTTCTGCTCTTGTGA33880.1360725634657216No Hit
CTTGACGCTCAGGGTA33820.13583158489996178No Hit
AGGTAGCGATTGACCA32470.13040956717036542No Hit
AGTTCACGACCAGAGA32120.1290038588700997No Hit
AGCTCTGCTGGCCTGT32080.1288432064929265No Hit
TGTGACTGACCGTTAA30900.12410396136631635No Hit
ACTGGAACTCTGGAAG30660.123140047103277No Hit
GCGGTTCGAAGCAAGC30120.12097124001143846No Hit
ACCCTTTCTAGGTGAC28540.11462547111309605No Hit
TGTACCCTGCTGAGAG28120.11293862115277718No Hit
TTCCAAACTCCGCTAG27590.11080997715523196No Hit
CAGTGGAGAGATCATC27370.10992638908077922No Hit
TCAGTCCACCCAGCAC27020.10852068078051351No Hit
CACAGCTCTCTCTGGG26950.10823953912046037No Hit
ACATGTGTGTCAATGC26920.10811904983758044No Hit
ACACTCCACCGTACAT26870.10791823436611392No Hit
TCCCAGACTCCTAACA25980.10434371897400967No Hit
GAACTACTGGCCCTGA25480.10233556425934434No Hit
ACGCTCTTGCCTCAAA24950.10020692026179912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)