FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14254287
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGTTTA1396390297.96282339481449No Hit
GAGGTTAA1534231.0763288265488131No Hit
GAGGTATA193440.13570654217920547No Hit
GACGTTTA155040.10876727822303564No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)