FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2265558
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC145770.6434176481025866No Hit
CTCCTAGTGAACGTAA116210.5129420654867366No Hit
TAGCTTTACCCTATCC104450.46103432355296137No Hit
CCAGGACTGTAACTCG82200.36282452270036786No Hit
CGACCAGACGCGCTGT76780.33890105660503944No Hit
ATCTGTACTGGGACTA75140.33166222184556743No Hit
GTTCTCGACCGTAGAG73710.3253503110491985No Hit
CTTCCTTTGGCTCAGC72780.32124536206974175No Hit
CGATCAAACCCGGCTA66340.29281969386791246No Hit
NNNNNNNNNNNNNNNN65250.28800851710704384No Hit
GGGGGGGGGGGGGGGG64990.2868608969622495No Hit
TGCTGCTACTTTCTTG59330.2618780891948032No Hit
ACAGCCGACTTGCGTA54200.2392346609532839No Hit
AACTTACCTCACCTAA49690.21932786536473575No Hit
GGCAACAGAATAGCAA48590.21447254936752888No Hit
CGCGTTGGAGCGGTTC47160.20816063857115996No Hit
ATCGAAAGATTTCCGC46360.20462949966410043No Hit
CCCTGAACTAGCTTTG44170.19496300690602492No Hit
GTAACTGTGTGAAAGT43530.19213809578037727No Hit
AGTGGAGTGAGTTGAA43100.19024010861783278No Hit
CAATTCGGATAACGGG41290.18225090684061057No Hit
GGGTAGAACCAGTCTA38960.17196646477379965No Hit
AAGAACCCTTAACCCA37750.1666256171768721No Hit
GTGAAGCGATCCCAGG37000.1633151744515038No Hit
TTCCTAAACTAATGCC36710.1620351365976947No Hit
TCCGGGAACGTTCTCC35620.15722395983682608No Hit
TTTAGTCTGAGCAATA35410.15629703587372296No Hit
CGCGATCGATATCTGG34950.1542666310021637No Hit
TGCAGATACTGCCACG34800.15360454245709004No Hit
TGGAACACTCCTAGTA33830.14932303653228035No Hit
TGATAGAGAGACTGTT33430.14755746707875056No Hit
AGTCCTGCTCGAACGA33190.1464981254066327No Hit
CTTTAACTGTCCGTAA33150.14632156846127975No Hit
CACATCCTGAGCCTAT33020.14574775838888254No Hit
TGCAGTATGACACCGC32390.14296698649957318No Hit
AGGTGTGGATCATGTG31700.1399213791922343No Hit
CATAGGTACAAGGTGC31480.13895031599279295No Hit
GCAACTTGAAGGTGCA31180.1376261389026456No Hit
TCTCAGAGATGCATGT30570.13493364548601272No Hit
CTATTGGGACTTGTGA30530.13475708854065974No Hit
CTTAGATCTTGTCACA30440.13435983541361554No Hit
ATTTCTGACGGGTAGT30200.1333004937414977No Hit
GAGTGTTACACCTGCG30000.1324177090147328No Hit
TACGTTTACTGCACCG29750.1313142281062767No Hit
ATGTACGTGTACTTTC29220.12897484858034974No Hit
CGAGTCTCTGCTACGC28960.12782722843555538No Hit
TCAAAGCACTCTGCAA28830.12725341836315823No Hit
TGAGGGATGTACGTTG28660.12650305134540807No Hit
TGGCAATTGAGTGGTG28570.12610579821836385No Hit
AGAGTACCTTAATCGC28490.1257526843276579No Hit
TCTATGGGATGCTCAA28450.12557612738230492No Hit
TTCTTAGACGTCCCGA27850.12292777320201027No Hit
GGTCGCATGGTACTAC27810.1227512162566573No Hit
GGTCTAAACTCCTACC27810.1227512162566573No Hit
GCATGATACTTGCGTA27400.12094150756678929No Hit
TCCATTTGAAATCTGC27020.119264216585936No Hit
GGGTGTGCTCGCAAAG26890.11869040651353883No Hit
GGGATGTGACTGGAAG26630.11754278636874449No Hit
TACTGTTTGCTTAAGC26390.11648344469662661No Hit
TGAACTGTGAACGTAA26350.11630688775127365No Hit
TTGCGGTCTTTTGGGT25910.1143647613523909No Hit
CTAGCTCACGAATAGT25750.11365853357097899No Hit
CTTTCGTCTCGAACGA25730.1135702550983025No Hit
CTCAATTTGGAATCTC25690.11339369815294952No Hit
CATTCTATGCCTAGCG25570.11286402731689059No Hit
CTACAACGAATCTGTG25540.11273160960787586No Hit
CACCAGGTGCGCCACA25330.11180468564477274No Hit
AGACTACTGGCCCTAG25300.11167226793575799No Hit
TCGGACCGATAGGCGA25240.11140743251772853No Hit
TCCGGGTGAACACCTA25200.11123087557237554No Hit
CGAGTCTCTTGGAACG25030.1104805085546254No Hit
GGCTGACTGAAACTGA24760.10928874917349281No Hit
GTAATCTCTACACAAA24730.10915633146447808No Hit
TGTAAGCACGCGCTGT24600.1085825213920809No Hit
AGCCAATTGTTATGGC24500.10814112902869846No Hit
TGCTAGTGAAGGCGTA24450.10792043284700724No Hit
ACCAAGTTGAAGCTAA23980.10584588873910974No Hit
TGCGCAGACATCAGGG23930.10562519255741852No Hit
AGGCGATGACCTGCGA23910.10553691408474203No Hit
CATAGTCGAAGATTCC23620.10425687623093297No Hit
AGCTTGTGATTGCGTA23450.10350650921318279No Hit
CACATTACTGATGGAC23240.10257958525007967No Hit
CTAACAGTGCATGATC23080.10187335746866776No Hit
ATGTCCAGACCGCTAG22960.10134368663260883No Hit
TAGTACCGAACGAGCA22890.10103471197824111No Hit
TCATCATTGGACTCGC22690.10015192725147624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)