FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2329612
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG227339897.58698014948412No Hit
CATCAGTA95400.4095102532095473No Hit
CATAAGTG47020.20183618559657143No Hit
CAACAGTG45780.19651341081690857No Hit
CAGCAGTG35980.1544463198163471No Hit
CATCAGAG35070.15054008993772353No Hit
CTTCAGTG30250.1298499492619372No Hit
CATCACTG30170.1295065444374428No Hit
CATCAGGG29780.1278324459180327No Hit
AATCAGTG28470.12220919191693724No Hit
CCTCAGTG25990.11156364235761149No Hit
CATCAGTC24360.1045667690585385No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)