FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences899421
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT87907897.73821158278493No Hit
TCATCCTA70350.7821698626116135No Hit
TCCTCCTT31570.3510035900874007No Hit
TAATCCTT13370.1486511878197196No Hit
ACATCCTT13240.14720581351780757No Hit
TCAACCTT10800.12007724969730527No Hit
TCATCCAT9780.10873662055922644No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)