FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences936853
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA39310.41959624402120715No Hit
GTCGACCGATGCTCAA33330.3557655256481006No Hit
CATTCAACTAGGCATG32650.3485071830906236No Hit
ACTGGGCACTTCTCGC27640.29503027689509453No Hit
TGTAAGCTGTTGTGAC26360.28136751443396135No Hit
GGGGGGGGGGGGGGGG24540.2619407740595376No Hit
GCTTTAGGAACTAGTC22520.24037922705056183No Hit
TAGTTGCGACATAGCT14900.15904309427412838No Hit
CATCAGTGATTCGCAA13680.14602077380336081No Hit
CAGGAGCCTCGTGCAC13090.13972309423143225No Hit
CAGGAGCCTTCCAATG11530.12307160248192618No Hit
TCCTTAAACAGGGAGG11110.11858850854936685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)