FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3681983
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA349306194.86901487595135No Hit
CCCCCCCA880012.3900436259483No Hit
CCCACCAA300420.8159190305875937No Hit
CCCACACA117540.31923015396866306No Hit
CCCACCCC108830.29557442280423346No Hit
CCCAACCA92980.2525269671261383No Hit
CCAACCCA83990.22811077617685907No Hit
ACCACCCA69010.18742617768740377No Hit
CACACCCA54440.14785510959719259No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)