FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2548370
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA72290.2836715233659162No Hit
GGGGGGGGGGGGGGGG66050.25918528314177297No Hit
GGACACCTGGCTCCTT62720.2461181068683119No Hit
NNNNNNNNNNNNNNNN55110.21625588121034228No Hit
GTTAAGAGAGTACGTT48130.188865824036541No Hit
CGCTTACTGATCACAC45450.1783492977864282No Hit
TACCAGTGATACGATC43130.16924543924155439No Hit
ATCTTACTGGTTTGGT41560.16308463841592863No Hit
ATTCCTAACTGCGTGC40180.15766941221251232No Hit
TTGTGGTGAAAGACAT39970.15684535605112288No Hit
ATAGATGGAGAGTAAT39570.15527572526752395No Hit
ATATGCCGAGAACAGC38460.15091999984303692No Hit
TGGAACACTTGAGGCA36810.14444527286069134No Hit
CTTTCTGCTCTTGTGA34280.13451735815442814No Hit
CTTGACGCTCAGGGTA34010.13345785737549884No Hit
AGCTCTGCTGGCCTGT33480.13137809658723026No Hit
GCGGTTCGAAGCAAGC33300.13067176273461076No Hit
TGTGACTGACCGTTAA30720.12054764418039766No Hit
ACTGGAACTCTGGAAG30430.11940966186228845No Hit
AGGTAGCGATTGACCA30400.11929193955351854No Hit
ACCCTTTCTAGGTGAC29580.1160741964471407No Hit
TGTACCCTGCTGAGAG28980.11371975027174232No Hit
AGTTCACGACCAGAGA28780.11293493487994286No Hit
GCTATACGACAGGTGA28020.1099526363911049No Hit
TTCCAAACTCCGCTAG27710.10873617253381573No Hit
ACATGTGTGTCAATGC27380.1074412271373466No Hit
ACACTCCACCGTACAT27130.10646020789759729No Hit
ACGCTCTTGCCTCAAA27080.1062640040496474No Hit
TCAGTCCACCCAGCAC26490.10394879864383902No Hit
TCCCAGACTCCTAACA26270.10308550171285959No Hit
CAGTGGAGAGATCATC25980.10194751939475036No Hit
CACAGCTCTCTCTGGG25840.10139814862049075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)