FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3977472
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC381383995.88600498004763No Hit
TAAGCCCC895472.2513546292720603No Hit
AAAGCCAC147050.369707190899144No Hit
TAACCCAC106820.26856254424921155No Hit
TAAGCCAA97920.2461865224946901No Hit
TAAGCAAC74710.18783287475059535No Hit
TAATCCAC72820.1830811128274442No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)