FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1629556
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT219841.3490791356664023No Hit
AAATAGGTGTTGCGTA144000.8836762897378182No Hit
GGCTTGCGACGACATT121480.7454791366482649No Hit
ATGGGTTACCATGCGC120070.7368264729779155No Hit
TATCACTACTGGTCCG119610.7340036181634751No Hit
GTGTTGTGAGGGTAGT79980.49080853925854656No Hit
CTAATCTTGCCACTTC77420.4750987385520964No Hit
CTGCTTTCTCCACTTC71770.44042671746168893No Hit
AGAGAATTGCCTCCTA66620.40882301682176003No Hit
AGCCGAGCTGCCCTTT50810.3118027241776288No Hit
CTGGCCAGAGGAATGC50010.30689341145686305No Hit
AATGGTGCTTCGTACA46820.28731752698281005No Hit
GGGGGGGGGGGGGGGG45560.27958535944760415No Hit
TCCCTGTGACCCGCAA38230.2346037816435888No Hit
TGCCGTTACAATCTGC33820.20754119527036813No Hit
CTTAATCTGGGAATTA33110.20318418023068863No Hit
GCTCCTAACCTATCTT32800.20128182155139193No Hit
TTGTCAACTAATACAG32320.19833623391893254No Hit
GAGAGAAGACTCACGG31270.1918927609729276No Hit
TCTTTCCACCGAGTGA30800.18900853974947776No Hit
GCTGTTCTGATAGGTA30610.18784257797829593No Hit
TCGTATACTTTCTGGA29590.1815832042593197No Hit
GTAATCGTGATCCTCC29510.18109227298724315No Hit
TAGCGCGACAAGACAT29320.17992631121606129No Hit
GGGATGTGAAGGTGCA28530.17507836490430523No Hit
AGTCCTGCTCCTAGTA27410.1682053270952333No Hit
GTTGTTGGATTCCATT25320.15537974761223303No Hit
TTGCGTCACCACTCAA24520.1504704348914674No Hit
TGTCAATCTGGTGTCC24180.14838397698514197No Hit
TGCAATGACACCTTGA24160.1482612441671228No Hit
TACGCCTTGCTGATCA23450.14390422912744333No Hit
CCTTTCTACTCGGGCT23050.14144957276706047No Hit
TTGTTTGTGGCGCTGT22540.13831988590757238No Hit
GCAAATCTGGAATTGA22440.13770622181747666No Hit
CAAGTGGGATAGCGAG21650.13285827550572057No Hit
TACAACCGATCGCTAA21280.13058771837236646No Hit
GGTTGAACTTCTTTGT21170.12991268787326118No Hit
AATCCAGACTACCAAC20870.12807169560297407No Hit
TAAGGGCGATTTCTTG20610.12647616896872524No Hit
CTGCCATTGTCTTTGT20180.12383741338131368No Hit
AGAACGCGAGGAGTCA19960.12248735238310313No Hit
CCCACCTCTCATGATC19870.121935054702017No Hit
CCTTTCTACTCATTTC19660.12064636011281601No Hit
TTCCACTCTCGAATCT19630.1204622608857873No Hit
GTGGTAACTTTTCCGC19170.11763940607134704No Hit
TCTTTCCACTTCGCAA18590.11408015434879194No Hit
GAGGTGCCTTCGTACA18180.11156413157939954No Hit
CGGAATTTGAGAGGCT17810.10929357444604541No Hit
CTTAGAGACGCTCTTC17340.1064093532225956No Hit
AGCACATTGCTGGAAG17310.1062252539955669No Hit
CCAGCTTTGGGAATGC16900.1037092312261745No Hit
ATGTGTGTGCCTTTGC16890.10364786481716491No Hit
GCTCCTAACGAATAGT16830.1032796663631075No Hit
TATTGCTTGTTCGTTT16740.10272736868202136No Hit
CGTTTGCTGGCTAATC16710.10254326945499265No Hit
CTAATCACTGCTCAGC16570.10168413972885867No Hit
GAGAGGTTGATGTGGG16510.10131594127480124No Hit
AACAGCTACTGGGCAA16400.10064091077569597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)