FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3085093
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT299045696.93244255521633No Hit
GCGCACCA227300.736768713293246No Hit
GCGCCCCT203890.660887694471447No Hit
GCGCACAT62450.20242501603679372No Hit
CCGCACCT55880.1811290615874465No Hit
GCCCACCT48820.15824482438616924No Hit
GCGAACCT40500.13127643153707197No Hit
GCGCACCG36320.11772740724509763No Hit
GCGCAACT35870.11626878022801905No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)