FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3085093
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT81570.2644004572957768No Hit
GGGGGGGGGGGGGGGG80690.2615480311290454No Hit
TCGCGGTGAGTCTTGA73320.2376589619826696No Hit
GTTAAGAGAGTACGTT62120.20135535622426942No Hit
CGCTTACTGATCACAC52490.17014073805878785No Hit
TACCAGTGATACGATC52190.16916832004740212No Hit
TTGTGGTGAAAGACAT51630.16735313975948213No Hit
ATCTTACTGGTTTGGT50810.16469519719502784No Hit
ATTCCTAACTGCGTGC48700.15785585718161493No Hit
ATAGATGGAGAGTAAT47460.15383652940122064No Hit
ATATGCCGAGAACAGC46580.1509841032344892No Hit
TGGAACACTTGAGGCA43810.14200544359602774No Hit
GCTATACGACAGGTGA43300.14035233297667202No Hit
CTTTCTGCTCTTGTGA42810.13876405022474203No Hit
AGCTCTGCTGGCCTGT40680.1318598823439034No Hit
CTTGACGCTCAGGGTA40290.13059573892910198No Hit
AGGTAGCGATTGACCA38570.1250205423304905No Hit
ACTGGAACTCTGGAAG37470.12145500962207623No Hit
TGTGACTGACCGTTAA37130.12035293587583906No Hit
AGTTCACGACCAGAGA35470.11497222287950477No Hit
TGTACCCTGCTGAGAG34970.1133515261938619No Hit
GCGGTTCGAAGCAAGC34630.11224945244762476No Hit
ACCCTTTCTAGGTGAC34620.1122170385139119No Hit
TTCCAAACTCCGCTAG33740.10936461234718046No Hit
TCCCAGACTCCTAACA33680.10917012874490331No Hit
CACAGCTCTCTCTGGG33570.10881357547406188No Hit
ACATGTGTGTCAATGC33190.10758184599297331No Hit
ACACTCCACCGTACAT33000.10696598125242902No Hit
TCAGTCCACCCAGCAC31790.1030438952731733No Hit
CAGTGGAGAGATCATC31170.10103423138297614No Hit
GAACTACTGGCCCTGA31090.10077491991327327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)