FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3232269
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT557211.7238973612654145No Hit
GAAGCAGTGGAACCTT188790.5840788622481606No Hit
GTTCTTCCTAACGTAA167990.5197277825577018No Hit
GATACGTACCGCTCGA157650.487737870826964No Hit
CGCTTAAGATAATAGG132080.4086293560344142No Hit
CATGGAGGATCGACAT130800.40466928959192444No Hit
TGTCCCATGAGACAAT126610.3917062595965868No Hit
AAAGCATGATCTTTGT121020.37441190692977594No Hit
TGAGCGCACAGGACAC114720.35492095490814657No Hit
TGTCGAAACTTCGCAA106410.32921146105104493No Hit
TAATTGCCTGTCTGGC105050.32500389045589956No Hit
GGGGGGGGGGGGGGGG97320.30108880170555113No Hit
GGAAGGACTAGGTAAT88820.27479148548589244No Hit
CATGTCAGAGGTTTGT86310.26702604269632263No Hit
AATGATGGAAAGCTAA85110.26331348040648844No Hit
TCGACCTTGTTTCGCC80700.24966981399134786No Hit
ATGGGTACTTGGCTGC66370.2053356326469115No Hit
GCTATGATGACCTGCG65440.20245839687229006No Hit
CAGCTCACTGTTTACG63040.19503327229262168No Hit
AAACGACCTAGGGAGG61350.1898047470677719No Hit
AGCCTACCTTAACTCG60320.18661813110233091No Hit
TGTTCCTCTTTATGGC58910.18225587041177577No Hit
TTGCGATGACATTCAG58250.18021396115236696No Hit
CTGCCTTGACCATAAC56600.17510918800384498No Hit
TAACCAGACATCACAC53920.166817798889882No Hit
CAATGTGACCAACGCC53900.16675592285171809No Hit
CCTGTTGACCCTAGTA53820.1665084186990625No Hit
AGCTTGTGACTCACTC52730.16313617461912977No Hit
GTGAGATCTCGATTAC52300.16180583979860588No Hit
CACAGCTCTGGACTGA51690.15991862063460682No Hit
CATGATGTGTCATGTG51160.1582789056232634No Hit
CATGCAAACGAAGGCT50300.15561823598221558No Hit
ATGCCGCGATGCCACG50180.15524697975323218No Hit
TTGTTTGTGATACGCT49980.15462821937159316No Hit
ATGGGTACTTTCGGGC49750.15391664493270826No Hit
CTATTCAACCGAACGA49380.15277193822667606No Hit
TGGGCCATGCGTTCTC49360.15271006218851216No Hit
ATTAGCGTGGTCGGTC47620.14732684686825262No Hit
CCGCTATTGTTCGCAA46820.1448518053416965No Hit
CATTAGTCTATTCTGG46740.14460430118904088No Hit
AGAACGCGAGGAATAT46480.14379991269291015No Hit
GGGCTGACTAATACAG45080.13946859002143694No Hit
GGGTCGTACCGCTCGA45010.13925202388786329No Hit
CACTATACTACGCCAC44530.13776699897192962No Hit
GCATCTCTGAGCCTAT44190.13671510632314327No Hit
AACCAACACCGGAATG43680.13513726734996376No Hit
GCAGATACTCGGCTCA43410.13430194083475108No Hit
AGCTCGGACCTTAAGC42920.13278597789973545No Hit
GGCTTGCGAGTACGTT42830.1325075357279979No Hit
CCCAATGCTGGAATGC42760.13229096959442424No Hit
GGTAGCCTGTGCCACG42460.13136282902196567No Hit
CTGCCATTGCACAGTT42430.13127001496471982No Hit
TTGACGTGACCTCAAA42320.13092969675481836No Hit
TTGTAACCTCATCCTC42040.13006343222052372No Hit
ATAGGAAACAGACTTC41870.12953748589613054No Hit
AACGTCCCTTACAGAA41770.12922810570531104No Hit
CTGATTACTGCTTTGA41710.12904247759081933No Hit
TGTTTGTTGCGCTCGA41170.12737182456039395No Hit
TGGAGTTACAAGTCTC40390.12495865907200174No Hit
CCTACGGGATGGAACG40190.12433989869036272No Hit
ATAGCCAACATGGCCC40080.12399958048046125No Hit
GATACCATGTCTGGAT39500.12220517537370806No Hit
CGCTTACTGGCCACGT39120.12102953064859392No Hit
ATCTTACTGCGCACTG38990.12062733640052854No Hit
CGATCAAACCGATCGC38810.12007045205705343No Hit
GGGATCAGATGAGTAA38790.12000857601888952No Hit
TCAGGCTCTTAAAGCA38740.11985388592347976No Hit
CGCTGAGTGTTAGCTG38330.11858542714111976No Hit
CGCTTCCCTGCGCTGT38230.11827604695030024No Hit
CTCGGATCTTTCTGAG37390.11567725334741633No Hit
AGCCGGTACGCGCAAA37210.11512036900394118No Hit
TGGGTGCACTTCTGAG36930.11425410446964654No Hit
CATGTTACTAACGTGG36580.11317127380177826No Hit
TCCAAAGTGAAGGCCA35970.11128405463777921No Hit
TACAACCGATTCCATT35830.1108509223706319No Hit
GCATAGTACGCTCCTT35750.11060341821797628No Hit
TTCTAACACTACGTTG35680.11038685208440263No Hit
AGTGGTACTCAACGCC35470.10973715368368166No Hit
CCTCCCTTGTTTCGCC35140.10871619905397725No Hit
TATCTCCCTGGAATTA35000.10828306678682995No Hit
CGAGTCTCTTACTTTC34980.10822119074866603No Hit
CTTAGGCCTTATGACC34950.10812837669142018No Hit
ACCTGCTTGCCAAACT34700.10735492621437139No Hit
GTCCTGACTTTACGAC34560.10692179394722408No Hit
AACAGCTACTCGAGAG34400.10642678564191285No Hit
CCTTCAGTGTAGCTTG34350.10627209554650309No Hit
TGAGATAGACTCATCC34310.1061483434701753No Hit
ATCGCAATGTAACTCG34300.10611740545109333No Hit
GTAAGAAACGACAAAT34280.10605552941292944No Hit
AACCACTGAAAACATG34120.10556052110761822No Hit
GTGTACTGAATCACAC33830.10466331855424162No Hit
TGGTCCTTGTTTCTGT33770.1044776904397499No Hit
TACGCCTTGGGTTGAG33750.10441581440158601No Hit
ATTGAGAGATGATCAC33210.10274516137116063No Hit
AGGTTACTGGTCCCGA33120.10246671919942307No Hit
CATGTCAGAACAGGTG33090.1023739051421772No Hit
GCATGGGCTATGTGGG33030.10218827702768551No Hit
GTTGCTAGACGCTCGA32860.10166233070329234No Hit
AGAACAATGAGTCGGA32600.10085794220716159No Hit
AGAACATGAAAGCTAA32570.10076512814991573No Hit
TTCACGCTGTGGGCAA32490.10051762399726012No Hit
GAAAGTAACCCTGCGA32340.10005355371103086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)