FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547745
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG53028296.81183762517229No Hit
CATCAGTA21710.39635231722790715No Hit
CATAAGTG15620.285169193694146No Hit
CAACAGTG15280.2789619257136076No Hit
CATCACTG14670.2678253566897005No Hit
CCTCAGTG11840.2161589790869839No Hit
AATCAGTG11050.20173620936749767No Hit
CATCAGAG9870.18019333814092325No Hit
CATCAGTC9680.17672457074003414No Hit
CATCAGGG9430.17216040310728534No Hit
CATCAGTT8800.1606587006727583No Hit
CAGCAGTG8470.15463399939752986No Hit
CTTCAGTG8220.15006983176478106No Hit
CATCATTG7250.13236086134971564No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)