FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547745
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC34480.6294899999087167No Hit
CTCCTAGTGAACGTAA27400.5002327725492701No Hit
TAGCTTTACCCTATCC24590.44893152835717354No Hit
CGACCAGACGCGCTGT20980.3830249477402806No Hit
CCAGGACTGTAACTCG19150.3496152406685593No Hit
ATCTGTACTGGGACTA18720.3417648723402313No Hit
GTTCTCGACCGTAGAG17310.316022966891528No Hit
CTTCCTTTGGCTCAGC16630.3036084309304512No Hit
CGATCAAACCCGGCTA15880.2899159280322048No Hit
TGCTGCTACTTTCTTG14430.26344375576226164No Hit
GGGGGGGGGGGGGGGG14200.2592447215401327No Hit
ACAGCCGACTTGCGTA13210.2411706177144474No Hit
GGCAACAGAATAGCAA11540.21068197792768534No Hit
AACTTACCTCACCTAA11280.20593524358962656No Hit
ATCGAAAGATTTCCGC11190.20429214324183698No Hit
GTAACTGTGTGAAAGT10660.19461610786040948No Hit
CGCGTTGGAGCGGTTC10590.19333814092323984No Hit
CCCTGAACTAGCTTTG10490.1915124738701403No Hit
AGTGGAGTGAGTTGAA10310.18822627317456117No Hit
CAATTCGGATAACGGG9720.17745483756127395No Hit
GGGTAGAACCAGTCTA9360.17088243617011564No Hit
TTTAGTCTGAGCAATA9130.16668340194798675No Hit
TTCCTAAACTAATGCC8810.16084126737806825No Hit
GTGAAGCGATCCCAGG8810.16084126737806825No Hit
AAGAACCCTTAACCCA8770.16011100055682845No Hit
TGGAACACTCCTAGTA8570.15645966645062942No Hit
TCCGGGAACGTTCTCC8420.15372116587098011No Hit
AGTCCTGCTCGAACGA8160.14897443153292134No Hit
CGCGATCGATATCTGG8150.1487918648276114No Hit
TGCAGATACTGCCACG8130.14842673141699148No Hit
TCTCAGAGATGCATGT7960.14532309742672228No Hit
CTTTAACTGTCCGTAA7670.14002866297273367No Hit
GCAACTTGAAGGTGCA7640.1394809628568038No Hit
ATTTCTGACGGGTAGT7470.13637732886653461No Hit
CTATTGGGACTTGTGA7410.1352819286346749No Hit
CATAGGTACAAGGTGC7290.13309112817095547No Hit
CACATCCTGAGCCTAT7270.13272599476033556No Hit
TGATAGAGAGACTGTT7230.13199572793909575No Hit
TTCTTAGACGTCCCGA7190.13126546111785592No Hit
AGGTGTGGATCATGTG7110.1298049274753763No Hit
TACGTTTACTGCACCG7100.12962236077006636No Hit
CTTAGATCTTGTCACA7050.1287095272435166No Hit
TGGCAATTGAGTGGTG7020.12816182712758675No Hit
TGCAGTATGACACCGC6940.1267012934851071No Hit
TCTATGGGATGCTCAA6840.1248756264320076No Hit
CGAGTCTCTGCTACGC6800.12414535961076778No Hit
GGTCGCATGGTACTAC6780.12378022620014788No Hit
GAGTGTTACACCTGCG6760.12341509278952797No Hit
TCAAAGCACTCTGCAA6690.12213712585235831No Hit
AGAGTACCTTAATCGC6530.11921605856739907No Hit
TGAGGGATGTACGTTG6510.11885092515677914No Hit
ATGTACGTGTACTTTC6500.11866835845146921No Hit
GGTCTAAACTCCTACC6490.11848579174615925No Hit
TGAACTGTGAACGTAA6480.11830322504084931No Hit
TCCATTTGAAATCTGC6470.11812065833553935No Hit
CTTTCGTCTCGAACGA6360.11611242457712986No Hit
TACTGTTTGCTTAAGC6320.11538215775589006No Hit
GGGTGTGCTCGCAAAG6270.11446932422934031No Hit
CTACAACGAATCTGTG6240.11392162411341045No Hit
CTAGCTCACGAATAGT6230.11373905740810047No Hit
CTCAATTTGGAATCTC6220.11355649070279054No Hit
TCCGGGTGAACACCTA6170.11264365717624078No Hit
GGGATGTGACTGGAAG6140.11209595706031092No Hit
CGAGTCTCTTGGAACG6140.11209595706031092No Hit
GCATGATACTTGCGTA6070.11081799012314124No Hit
GGCTGACTGAAACTGA6060.1106354234178313No Hit
TCGGACCGATAGGCGA5930.10826205624880192No Hit
CATTCTATGCCTAGCG5840.10661895590101234No Hit
GTAATCTCTACACAAA5830.10643638919570239No Hit
TAGTACCGAACGAGCA5770.10534098896384267No Hit
TGCTAGTGAAGGCGTA5740.10479328884791281No Hit
ACCAAGTTGAAGCTAA5690.10388045532136304No Hit
CACATTACTGATGGAC5660.10333275520543318No Hit
TGCGCAGACATCAGGG5650.10315018850012322No Hit
AGCCAATTGTTATGGC5650.10315018850012322No Hit
TGTAAGCACGCGCTGT5630.10278505508950332No Hit
CATAGTCGAAGATTCC5620.10260248838419338No Hit
CACCAGGTGCGCCACA5620.10260248838419338No Hit
AGACTACTGGCCCTAG5570.10168965485764363No Hit
AGCTTGTGATTGCGTA5490.100229121215164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)