FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3376034
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT94070.2786405587147523No Hit
TCGCGGTGAGTCTTGA92710.27461216326612825No Hit
GGGGGGGGGGGGGGGG82650.2448138851682181No Hit
GTTAAGAGAGTACGTT64090.1898381355164077No Hit
CGCTTACTGATCACAC59210.17538330478899206No Hit
TTGTGGTGAAAGACAT54950.16276494845727266No Hit
TACCAGTGATACGATC53770.1592697229944959No Hit
ATCTTACTGGTTTGGT53760.1592401024397266No Hit
ATTCCTAACTGCGTGC51300.1519534459664802No Hit
ATAGATGGAGAGTAAT51180.15159799930924867No Hit
ATATGCCGAGAACAGC48110.14250448899507528No Hit
TGGAACACTTGAGGCA45740.13548441751475251No Hit
CTTGACGCTCAGGGTA44810.13272970592120814No Hit
CTTTCTGCTCTTGTGA43550.12899751602027704No Hit
AGGTAGCGATTGACCA43230.12804965826765963No Hit
AGCTCTGCTGGCCTGT41350.12248099397103229No Hit
TGTGACTGACCGTTAA39160.11599409247655681No Hit
ACGCTCTTGCCTCAAA38660.11451306473809209No Hit
GCGGTTCGAAGCAAGC38340.11356520698547468No Hit
GCTATACGACAGGTGA37760.11184721480885561No Hit
ACTGGAACTCTGGAAG37620.11143252704208548No Hit
TGTACCCTGCTGAGAG36880.10924060598915769No Hit
TTCCAAACTCCGCTAG36230.10731526992915356No Hit
ACCCTTTCTAGGTGAC36140.1070486849362299No Hit
AGTTCACGACCAGAGA35260.10444207611653201No Hit
ACATGTGTGTCAATGC35020.10373118280206893No Hit
TCAGTCCACCCAGCAC34280.10153926174914114No Hit
CACAGCTCTCTCTGGG34090.10097647120852456No Hit
TCCCAGACTCCTAACA34060.10088760954421666No Hit
ACACTCCACCGTACAT33990.10068026566083162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)