FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1760551
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT364372.0696361536814325No Hit
AAATAGGTGTTGCGTA144240.8192889612399754No Hit
TATCACTACTGGTCCG126740.7198882622542602No Hit
ATGGGTTACCATGCGC121960.6927376713313048No Hit
GTGTTGTGAGGGTAGT84080.47757775832679655No Hit
GGCTTGCGACGACATT82360.4678080896264863No Hit
CTAATCTTGCCACTTC79680.4525855825818167No Hit
CTGCTTTCTCCACTTC72360.41100769020607747No Hit
AGAGAATTGCCTCCTA65050.3694865982297587No Hit
GGGGGGGGGGGGGGGG54530.3097325780394888No Hit
CTGGCCAGAGGAATGC52630.2989405021496111No Hit
AGCCGAGCTGCCCTTT52510.2982588973565662No Hit
AATGGTGCTTCGTACA46060.26162263973040256No Hit
GCTCCTAACCTATCTT40750.23146162763816558No Hit
TCCCTGTGACCCGCAA40170.22816720447178188No Hit
GAGAGAAGACTCACGG36850.20930947186420615No Hit
TGCCGTTACAATCTGC34990.1987445975720101No Hit
TTGTCAACTAATACAG33810.1920421504404019No Hit
CTTAATCTGGGAATTA33520.19039493885721007No Hit
GCTGTTCTGATAGGTA33510.19033813845778963No Hit
TCTTTCCACCGAGTGA32810.18636211049836104No Hit
GTAATCGTGATCCTCC30730.174547627418916No Hit
TAGCGCGACAAGACAT30150.1712532042525323No Hit
TCGTATACTTTCTGGA29450.16727717629310368No Hit
AGTCCTGCTCCTAGTA28610.16250594274178937No Hit
GGGATGTGAAGGTGCA28480.16176753754932405No Hit
GCAAATCTGGAATTGA26840.152452272044377No Hit
TGCAATGACACCTTGA25870.14694263330059737No Hit
GTTGTTGGATTCCATT25670.1458066253121892No Hit
TTGCGTCACCACTCAA25490.14478421812262185No Hit
TGTCAATCTGGTGTCC24770.14069458936435242No Hit
CCTTTCTACTCGGGCT23650.13433294462926662No Hit
TACGCCTTGCTGATCA23620.1341625434310054No Hit
GGTTGAACTTCTTTGT23260.1321177290518707No Hit
TACAACCGATCGCTAA22890.13001611427331558No Hit
CAAGTGGGATAGCGAG22380.12711929390287474No Hit
TTCCACTCTCGAATCT22140.12575608431678492No Hit
TTGTTTGTGGCGCTGT21940.12462007632837674No Hit
CCCACCTCTCATGATC21650.12297286474518489No Hit
TAAGGGCGATTTCTTG21640.12291606434576448No Hit
AGAACGCGAGGAGTCA21610.12274566314750325No Hit
AATCCAGACTACCAAC21610.12274566314750325No Hit
CTGCCATTGTCTTTGT21020.11939443958169914No Hit
CCTTTCTACTCATTTC20710.11763362719966645No Hit
GCTCCTAACGAATAGT19650.11161278486110314No Hit
GTGGTAACTTTTCCGC19400.11019277487559291No Hit
TCTTTCCACTTCGCAA19000.10792075889877657No Hit
GCGACGTTGAGTGGTG18440.10473993653123369No Hit
GAGAGGTTGATGTGGG18120.10292232374978061No Hit
CGGAATTTGAGAGGCT17880.1015591141636908No Hit
AGCACATTGCTGGAAG17740.10076390857180507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)