FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3712819
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG361023097.23689735481315No Hit
CCGTTATA137970.3716044331813643No Hit
CCGGTATG126340.3402805253905456No Hit
CCGTTTTG103290.2781983177741765No Hit
CCGTTAAG79060.2129379320672513No Hit
CCGATATG75700.2038882046229563No Hit
CCCTTATG66840.18002493523115454No Hit
CCGTAATG55770.15020931534771828No Hit
CCGTTATC53730.14471483797082488No Hit
CCGTTATT51170.1378198075370763No Hit
ACGTTATG50670.13647312190548475No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)