FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1822681
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATTC179489498.4754874824503No Hit
ATGCATTA70300.38569557700991014No Hit
ATGCAATC34860.19125672566949456No Hit
ATGCATAC30230.1658545845378319No Hit
AAGCATTC20390.11186817660358558No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)