FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3232269
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAAGGG316409297.89073867304981No Hit
GAGAAGGA195320.6042813887086749No Hit
GTGAAGGG68830.21294638534107158No Hit
GAGCAGGG45700.14138674720451794No Hit
GAGATGGG44630.13807637916274915No Hit
GAGAAGGC40930.12662931210242712TruSeq Adapter, Index 20 (100% over 8bp)
GAGAACGG37390.11567725334741633No Hit
GAGAAGCG34420.10648866168007674No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)