FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3552995
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA342535096.40739713959631No Hit
CCCCCCCA476521.341178357976862No Hit
CCCACCAA276510.778244832880429No Hit
CCCACACA97150.2734312882511796No Hit
CCCACCCC68400.19251363990098494No Hit
CCCAACCA63860.17973568777890203No Hit
CCAACCCA54730.1540390571897793No Hit
ACCACCCA50290.14154255775761013No Hit
CACACCCA42740.1202928796691242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)