FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4274021
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG418983598.03028576602688No Hit
CGCTCGAG92360.21609627093549613No Hit
AGCTCGAA68770.16090234465389852No Hit
AGCACGAG65710.15374281034183032No Hit
AGCTCGCG64220.15025663186961413No Hit
AGCTCCAG51740.12105696251843404No Hit
AGCTCGAC49740.11637752832753981No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)