FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9117391
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC887039297.29090262773637No Hit
CAACCATA417460.4578722136628779No Hit
AAACCATC393120.4311759800583303No Hit
CCACCATC365320.4006848011673515No Hit
CAACCAAC250060.27426705731935813No Hit
CAAACATC149470.16393944276383451No Hit
CAACAATC146170.1603199862767759RNA PCR Primer, Index 36 (100% over 8bp)
CAACCCTC105440.11564711878650372No Hit
CACCCATC105090.1152632370378763No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)