FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3981221
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC386924997.18749599683112No Hit
CCGCTTAC149490.37548782144975124No Hit
CAGCTTAA119270.29958146005961483No Hit
CAGCATAC115600.29036318255128263No Hit
CAGCTAAC104790.2632107084736065No Hit
AAGCTTAC96090.24135811601516216No Hit
CACCTTAC80710.20272675141621127No Hit
CAGATTAC75090.18861047904650358No Hit
CATCTTAC51430.12918147472848154No Hit
CAGCTTCC47710.11983760760831916No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)