FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4161891
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG406891297.76594341370306No Hit
CGCTCGAG113600.27295284763584626No Hit
AGCTCGCG84960.2041379747811752No Hit
AGCTCGAA69840.1678083352014745No Hit
AGCACGAG68640.16492503047292684No Hit
AGCTCCAG55920.13436200035032153No Hit
AGCGCGAG52280.12561597600706026No Hit
AGCTCGAC50030.12020977964103335No Hit
AGCTGGAG44280.10639394448340911No Hit
AGATCGAG41630.10002664654119965No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)