FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4272603
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA225520.5278281178944076No Hit
CGACCAGACGCGCTGT210240.49206537560358404No Hit
GATGAATGACTCCTAC202570.4741137896500096No Hit
TAGCTTTACCCTATCC196160.4591112256392649No Hit
CCAGGACTGTAACTCG148350.34721222636411575No Hit
ATCTGTACTGGGACTA138940.3251881815371098No Hit
GTTCTCGACCGTAGAG134080.31381338261476666No Hit
CTTCCTTTGGCTCAGC133930.31346230857395363No Hit
CGATCAAACCCGGCTA126320.29565115223670446No Hit
AGACCATTGAATCCAC117950.2760612207593357No Hit
TGCTGCTACTTTCTTG111880.2618544245744339No Hit
GGGGGGGGGGGGGGGG104610.2448390360630276No Hit
GGCAACAGAATAGCAA103080.2412580808467344No Hit
ACAGCCGACTTGCGTA101300.23709200222908608No Hit
AACTTACCTCACCTAA94120.22028725814216768No Hit
CGCGTTGGAGCGGTTC88650.20748475812051811No Hit
ATCGAAAGATTTCCGC87330.2043953065613632No Hit
GTAACTGTGTGAAAGT81930.19175664109209303No Hit
CCCTGAACTAGCTTTG81560.1908906584580875No Hit
AGTGGAGTGAGTTGAA80620.18869059446899233No Hit
CAATTCGGATAACGGG77290.1808967507629424No Hit
GGGTAGAACCAGTCTA71710.1678367964446966No Hit
AAGAACCCTTAACCCA71700.16781339150864238No Hit
TTCCTAAACTAATGCC70090.16404519680391555No Hit
CGCGATCGATATCTGG68180.1595748540175626No Hit
GTGAAGCGATCCCAGG67680.1584046072148524No Hit
TTTAGTCTGAGCAATA67400.1577492690053347No Hit
TGGAACACTCCTAGTA64760.15157036588702485No Hit
CTTTAACTGTCCGTAA62540.14637447008299156No Hit
TGCAGATACTGCCACG62130.1454148677047692No Hit
AGTCCTGCTCGAACGA61930.1449467689836851No Hit
TGATAGAGAGACTGTT60980.14272330005853576No Hit
CACATCCTGAGCCTAT60880.1424892506979937No Hit
GCAACTTGAAGGTGCA60130.1407338804939284No Hit
AGGTGTGGATCATGTG58720.13743378451028565No Hit
CATAGGTACAAGGTGC58580.13710611540552678No Hit
TCTCAGAGATGCATGT58340.1365443969402259No Hit
CTATTGGGACTTGTGA57230.13394644903820926No Hit
CTTAGATCTTGTCACA57220.13392304410215505No Hit
TGGCAATTGAGTGGTG56960.13331451576474576No Hit
TGCAGTATGACACCGC56680.13265917755522805No Hit
TACGTTTACTGCACCG56310.1317931949212225No Hit
TCAAAGCACTCTGCAA56140.13139531100830104No Hit
TCCGGGAACGTTCTCC56070.1312314764559216No Hit
ATTTCTGACGGGTAGT54690.12800159528044147No Hit
TGAACTGTGAACGTAA54280.12704199290221907No Hit
ATGTACGTGTACTTTC54250.1269717780940565No Hit
AGAGTACCTTAATCGC53980.126339844820593No Hit
CGAGTCTCTGCTACGC53150.12439723512809404No Hit
TCTATGGGATGCTCAA52480.12282910441246238No Hit
TTCTTAGACGTCCCGA51500.12053542067915039No Hit
GGTCTAAACTCCTACC51040.11945879362065702No Hit
TCCATTTGAAATCTGC50870.11906090970773556No Hit
CTACAACGAATCTGTG50600.11842897643427204No Hit
GGTCGCATGGTACTAC50450.11807790239345899No Hit
TACTGTTTGCTTAAGC50080.11721191975945344No Hit
GAGTGTTACACCTGCG50020.1170714901431282No Hit
GGGTGTGCTCGCAAAG49720.11636934206150208No Hit
GCATGATACTTGCGTA49240.1152459051309003No Hit
CACCAGGTGCGCCACA49070.11484802121797884No Hit
CTCAATTTGGAATCTC47940.11220326344385377No Hit
CATTCTATGCCTAGCG47920.11215645357174538No Hit
CTTTCGTCTCGAACGA47620.11145430549011925No Hit
TTGCGGTCTTTTGGGT47330.11077556234454734No Hit
GTAATCTCTACACAAA46890.10974574515816236No Hit
CTAGCTCACGAATAGT46580.10902019214048203No Hit
CACATTACTGATGGAC46390.10857549835545216No Hit
GGGATGTGACTGGAAG46100.10789675520988026No Hit
TCGGACCGATAGGCGA45870.10735844168063356No Hit
CGAGTCTCTTGGAACG45860.10733503674457937No Hit
TGTAAGCACGCGCTGT45850.10731163180852515No Hit
ACCAAGTTGAAGCTAA45620.10677331827927845No Hit
AGACTACTGGCCCTAG45540.10658607879084483No Hit
AGCCAATTGTTATGGC44770.10478389871467113No Hit
TGCTAGTGAAGGCGTA44650.1045030394820207No Hit
ACCTCAGCTAATCCGT44610.10440941973780386No Hit
CATAGTCGAAGATTCC44170.10337960255141888No Hit
TCCGGGTGAACACCTA43860.10265404953373858No Hit
TGCGCAGACATCAGGG43760.10242000017319654No Hit
GCCATTCACCGGAAGT43420.10162423234735359No Hit
ATGTCCAGACCGCTAG43150.10099229907389008No Hit
TGAGGGATGTACGTTG43110.10089867932967327No Hit
TAGTACCGAACGAGCA43000.10064122503307701No Hit
CTAACAGTGCATGATC42930.10047739048069759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)