FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4414001
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC429078497.20849632793468No Hit
GGGCCTAC281640.6380605713501197No Hit
GGGACTAA120220.2723606088897578No Hit
GGGACAAC101300.2294970028325775No Hit
CGGACTAC71170.1612369367383469No Hit
GGGACTCC71150.16119162637253595No Hit
GCGACTAC67630.15321700198980473No Hit
GGGAATAC65780.14902579315228973No Hit
GGCACTAC63730.144381480656665No Hit
TGGACTAC47500.10761211880106053No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)