FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15251479
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGACG1494857698.01394343460068No Hit
AGCTGCCG983720.6449997406808874No Hit
AGCTGACA398090.2610173085508625No Hit
AGCAGACG321660.21090413592019502No Hit
AGCTGACC233360.15300811154118232No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)