FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3981221
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCAACTAGGCATG148490.37297602921314843No Hit
TGGCCGATGGTTAGAA144700.36345633663642385No Hit
GTCGACCGATGCTCAA129410.32505103333876717No Hit
ACTGGGCACTTCTCGC115330.2896849986473999No Hit
TGTAAGCTGTTGTGAC112020.28137096634424463No Hit
GGGGGGGGGGGGGGGG109110.2740616509357305No Hit
GCTTTAGGAACTAGTC90550.22744278702438275No Hit
TAGTTGCGACATAGCT68350.17168099937180076No Hit
CATCAGTGATTCGCAA65600.1647735707211431No Hit
CAGGAGCCTCGTGCAC56000.14066036524975628No Hit
CAGGAGCCTTCCAATG48570.12199774893179756No Hit
TCCTTAAACAGGGAGG46210.11606991925341498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)