FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3585984
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAACAA352756898.37099105852117No Hit
GCCAAAAA94120.26246631329085685No Hit
CCCAACAA67350.18781455801252878RNA PCR Primer, Index 36 (100% over 8bp)
GACAACAA46620.13000615730577716No Hit
ACCAACAA42750.11921414038657172No Hit
GCAAACAA40150.11196368974317789No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)