FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4234495
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT125660.2967532137834618No Hit
TCGCGGTGAGTCTTGA116860.2759715149031939No Hit
GGGGGGGGGGGGGGGG106180.25075008944395966No Hit
GTTAAGAGAGTACGTT79570.18790906589805867No Hit
CGCTTACTGATCACAC74120.17503858193243824No Hit
TACCAGTGATACGATC68190.1610345507551668No Hit
TTGTGGTGAAAGACAT68090.16079839508607283No Hit
ATCTTACTGGTTTGGT67470.15933422993769034No Hit
ATTCCTAACTGCGTGC64120.1514230150230429No Hit
ATAGATGGAGAGTAAT62790.1482821446240933No Hit
ATATGCCGAGAACAGC61500.1452357364927813No Hit
GCGGTTCGAAGCAAGC61100.1442911138164055No Hit
TGGAACACTTGAGGCA59470.14044177641017408No Hit
GCTATACGACAGGTGA57020.1346559625173722No Hit
CTTGACGCTCAGGGTA55940.13210548129115748No Hit
AGGTAGCGATTGACCA55730.1316095543860602No Hit
CTTTCTGCTCTTGTGA53490.12631966739835565No Hit
AGCTCTGCTGGCCTGT52760.12459573101396978No Hit
ACGCTCTTGCCTCAAA49320.1164719759971378No Hit
AGTTCACGACCAGAGA48920.11552735332076199No Hit
ACTGGAACTCTGGAAG48840.11533842878548681No Hit
TGTGACTGACCGTTAA48620.11481888631348011No Hit
TGTACCCTGCTGAGAG47260.11160716921380234No Hit
ACCCTTTCTAGGTGAC46950.1108750866396111No Hit
TTCCAAACTCCGCTAG46490.10978877056177891No Hit
TCAGTCCACCCAGCAC45360.10712021150101725No Hit
CACAGCTCTCTCTGGG44540.10518373501444682No Hit
ACACTCCACCGTACAT44200.10438080573952739No Hit
GGGAGCTCTTGATGAA43620.10301110285878246No Hit
CAGTGGAGAGATCATC43430.10256240708750394No Hit
ACATGTGTGTCAATGC42950.10142885987585297No Hit
TCCCAGACTCCTAACA42920.10135801317512477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)