FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3383959
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG327034396.6425125127107No Hit
CTATTTGA237680.7023725760270736No Hit
CGATTTGG89300.2638920861629825No Hit
CTTTTTGG83850.2477866900869662No Hit
CTATTTGC68640.20283933700142348No Hit
CTAGTTGG65800.19444680033061867No Hit
GTATTTGG64820.1915507841554818No Hit
CAATTTGG64120.18948220117324116No Hit
CTAATTGG62970.18608381484527442No Hit
CTATATGG61230.18094190857513345No Hit
CTATTTTG61030.18035088486592182No Hit
CTATTTCG54510.16108351194562345No Hit
ATATTTGG52340.15467090470067751No Hit
CTATTAGG45530.13454654740202232No Hit
CTATTTGT38770.11456994603066999No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)