FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4022835
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG391365397.28594386794389No Hit
ATTGGCCG315780.7849688093098525No Hit
ATTGGACC108490.26968543328274713No Hit
ATTGGACA84490.2100260139926196No Hit
ATAGGACG70840.17609471927135964No Hit
ATTGCACG69560.17291288357588616No Hit
AATGGACG68000.16903502132202786No Hit
ATTGGAAG49950.12416616639757783No Hit
ATTCGACG47350.11770306264114735No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)