FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004949920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15896063
Sequences flagged as poor quality0
Sequence length34
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG17900.09.22925
TAGACAG26350.08.76674655
TAGGACC17400.08.6093364
GTATAGG13550.08.4729421
TACACCG8050.08.3479615
GTAGGAC14900.08.1746293
AGTACCG8050.08.1740465
TACACTG27050.08.0740695
CTAGTAC9600.08.0209653
TCTATAC12600.08.0001313
GTGTAGG26800.07.99311971
GTCTAGG21750.07.98219161
TAATACG4051.9463187E-107.95074654
GTATTAG17100.07.94209961
CCTACAC23400.07.89756443
TAGGACT21550.07.8609174
CTATACT17300.07.8498394
GTACTAG9250.07.71948151
CTAGGAC24600.07.6830523
ATAGGAC13050.07.61698253