FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3888737
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT379777197.66078292257872No Hit
AAGTTGAA166350.42777385048153166No Hit
AAGTTCAT78510.2018907424184253No Hit
AAGTTGCT76290.19618194802065556No Hit
AACTTGAT73790.18975312550064455No Hit
AATTTGAT73500.1890073820883233No Hit
AAGTAGAT69000.1774355015523035No Hit
AAGATGAT66610.17128954722317297No Hit
ATGTTGAT50520.12991364548438222No Hit
AAGTTTAT48190.12392198289573196No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)