FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5145297
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT501754097.51701408101418No Hit
ATCGTACA224250.43583489932651115No Hit
ATAGTACT153770.2988554402204577No Hit
ATCGAACT137200.2666512739692189No Hit
AACGTACT101590.19744244112633344No Hit
ATCGTAAT77760.15112830221462434No Hit
ATCCTACT77000.1496512251868065No Hit
CTCGTACT54150.10524173823202043No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)