FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3383959
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT93220.27547615086353No Hit
TCGCGGTGAGTCTTGA91720.27104347304444293No Hit
GGGGGGGGGGGGGGGG79510.23496147559707434No Hit
GTTAAGAGAGTACGTT63660.18812284664205448No Hit
CGCTTACTGATCACAC58590.17314039561354022No Hit
ATCTTACTGGTTTGGT54160.16004922045450312No Hit
ATAGATGGAGAGTAAT51960.15354795965317547No Hit
TACCAGTGATACGATC51490.1521590539365282No Hit
TTGTGGTGAAAGACAT51070.1509179041471838No Hit
ATTCCTAACTGCGTGC50660.14970630554330003No Hit
ATATGCCGAGAACAGC48750.14406202912032917No Hit
TGGAACACTTGAGGCA45050.13312809049991445No Hit
GCGGTTCGAAGCAAGC44270.13082309803398917No Hit
CTTGACGCTCAGGGTA44170.13052758617938337No Hit
AGGTAGCGATTGACCA42340.12511971924009718No Hit
CTTTCTGCTCTTGTGA41640.12305113625785656No Hit
GCTATACGACAGGTGA41550.12278517558871134No Hit
AGCTCTGCTGGCCTGT41520.12269652203232959No Hit
TGTGACTGACCGTTAA38570.1139789223214584No Hit
ACTGGAACTCTGGAAG38200.11288552845941692No Hit
TGTACCCTGCTGAGAG37330.11031457532434642No Hit
ACGCTCTTGCCTCAAA36920.10910297672046262No Hit
AGTTCACGACCAGAGA36610.10818688997118464No Hit
ACCCTTTCTAGGTGAC34730.10263126710459552No Hit
ACACTCCACCGTACAT34710.10257216473367438No Hit
ACATGTGTGTCAATGC34690.10251306236275322No Hit
TTCCAAACTCCGCTAG34170.10097640071880304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)